Plant Informatics (Agriculture Victoria)
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- Australia
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shortbread2
shortbread2 PublicShortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.
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bakery-research
bakery-research PublicBreeder-AI-Tool: A plant biology GraphRAG pipeline built with Neo4j, Google Gemini, LangChain, vector search, full-text search, graph traversal, and Bakery-Genebank accession lookup
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pretzel-application-note
pretzel-application-note PublicA repository for an application note about pretzel
TeX
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Repositories
- genolink Public
Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.
- fairybread Public
- bakery-research Public
Breeder-AI-Tool: A plant biology GraphRAG pipeline built with Neo4j, Google Gemini, LangChain, vector search, full-text search, graph traversal, and Bakery-Genebank accession lookup
- shortbread2 Public
Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.
- brioche Public
Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.
- pretzel-static-pages Public
Static HTML Content for the landing page of the Pretzel project instance
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