Name		Name	Last commit message	Last commit date
Reference		Reference
analysis		analysis
.gitignore		.gitignore
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
agg_1.R		agg_1.R
agg_2.R		agg_2.R
agg_3.R		agg_3.R
agg_4.R		agg_4.R
agg_5.R		agg_5.R
agg_6.R		agg_6.R
clean_cases.R		clean_cases.R
estimate_rt.R		estimate_rt.R
jhu-case_timeseries.csv		jhu-case_timeseries.csv
overlay_raw.png		overlay_raw.png
overlay_raw_est_case.png		overlay_raw_est_case.png
overlay_raw_est_case_7day.png		overlay_raw_est_case_7day.png
plot_agg.R		plot_agg.R
plot_cases_rt_together.R		plot_cases_rt_together.R
plot_raw_cases.R		plot_raw_cases.R
plot_raw_est_cases_together.R		plot_raw_est_cases_together.R
plot_rt_cases.R		plot_rt_cases.R
res_epinow.R		res_epinow.R
rt_data.Rproj		rt_data.Rproj

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Overview

MMED 2021 Workshop Project concerning Rt Estimation.

Project Steps

Get the data
Run it through EpiNow2 to get baseline Rt estimates
Develop some aggregation scenarios
Apply scenarios to data
recompute Rt on aggregated data

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MMED 2021 project (public repo)

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