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Update the Quant AQ CLI - #35

Merged

emmleroy merged 135 commits into

masterfrom

emmleroy-v1.0.0

Jul 15, 2026

Merged

Update the Quant AQ CLI #35
emmleroy merged 135 commits into
masterfrom
emmleroy-v1.0.0

Commits on Jun 24, 2026
- Update python to 3.9+ and Poetry to 1.0+
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  7ec075a
- Remove deprecated is_datetime_or_timedelta_dtype from pandas
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  1895093
- Bump actions/cache to v4 and release-drafter to v6
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- Bump github runner image to ubuntu-latest
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- Add Python 3.11 to gh-actions version matrix
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- Bump version from 0.5.0 to 1.0.0rc0
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- Remove redundant timestamp re-conversion
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- Merge pull request #28 from quant-aq/emmleroy-sc-20241-update-poetry-and-python-versions
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Commits on Jun 25, 2026
- Add modulair-X rawsd and cloudapi data to tests
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  a876d71
- Merge pull request #29 from quant-aq/emmleroy-sc-20243-test-X-series
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Commits on Jun 26, 2026
- Port david's resampling function
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  019e9d0
- Let exceptions propagate
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  f897777
- Add loguru as dependency
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  5366b8e
- Postpone evaluation of annotations for compatibility with Python 3.9
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Commits on Jun 29, 2026
- Add logging for edge case where u/v cols are present but nan'd
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  c144360
- Add more resampling tests for variety of quantaq products
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  9046c41
- Fix: remove all Unnamed columns in safe_load()
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  577eb00
- Remove relative imports
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  8b95643
Commits on Jun 30, 2026
- Merge pull request #31 from quant-aq/emmleroy-sc-20239-modify-resample
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  9235f1a
- Use namedtuple for FLAG and FLAG_CRITERIA
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  6c74da7
- Replace single-filter flag command with multi-filter flagging
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  02606fb
- Add util for determining the timestamp col
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  28197e1
- Refactor - rename bit to flag_value, fix click commands
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  1f8f9ba
- Update tests
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  79e26bf
- Fix indentation
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  003d5ad
- Remove relative imports
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  d4b2c97
- Remove arisense flagging functionality
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  22b7560
- Modify safe_loader() to add device serial number to rawSD columns
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  61f6d34
- Add func to infer data model from the sn column
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  f0b40aa
- Add func to infer data source from the dataframe sampling frequency (tdiff)
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  5ad1d1f
- Infer data model and source in flag_dataframe() instead of taking args
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  045e34b
- Define identical FLAG_DEFINITIONS for QuantAQ products and modifiable FLAG_CRITERIA
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  d04686a
- Convert model-specific FLAG_DEFINITIONS into one generic list
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  e19c028
- Remove tests for rawSD flagging - currently not implemented
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  fe018eb
- Upgrade deps to Click8.x
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  30646f7
- Port expunge_dataframe() and echo_flag_table() from Isoprene
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  89a2ce6
- Move flag_summary and echo_flag_table to flag.py and fix all_nan_columns definition
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  49c186a
- Remove arisense from test_expunge() and add some expunge tests from Isoprene
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  cae63d5
- Remove feather tests and fix --wind unpack error in resample CLI
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  2e67857
Commits on Jul 1, 2026
- Remove data model and data source as required args to flag_command
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  eb2c043
- Remove data model and data source as required args in cli logic and tests
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  04d34ed
- Fix cli args again
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  9e729a7
- Add jupyter for playbook notebooks
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  cf1fe9a
- Rename quantaq_cli to quantaq_py
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  61ccdea
- Add logging configuration file
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  7d09cc4
- Create importable concat_files() function and move concat_command() to cli.py
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  b11c7c5
- Create importable merge_files() function and move merge_command() to cli.py
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  554d0fe
- Create importable resample_dataframe() function and move resample_command() to cli.py
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  6afab69
- Add importable flag_dataframe() and echo_flag_table(), move flag_command to cli.py
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  736358d
- Create importable expunge_dataframe(), move expunge_command to cli.py
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  6db884c
- Create importable clean_file(), move clean_command to cli.py
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  ace9101
- Remove feather functionality for parquet
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  134f7b0
- Make add_sn_column an optional arg
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  63fee0d
- Remove console/commands sub-dirs
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  ee78d7f
- Add tests for parquet file support
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  4f332ba
- Move library function into quantaq_py/toolkit
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Commits on Jul 2, 2026
Commits on Jul 6, 2026
Commits on Jul 8, 2026
- Set log level for noisy loggers to WARNING
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- Add init file
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  a294b6a
- Undo package rename
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  06e2356
- Merge pull request #32 from quant-aq/emmleroy-sc-20240-library-sc-20270-logging-v2
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Commits on Jul 9, 2026
Commits on Jul 10, 2026
Commits on Jul 13, 2026
- Add schema standardization; move safe_load to toolkit/load.py to avoid circular import issue
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  109d4f3
- Remove cloudAPI from flag criteria
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  365feac
- Test different options for nonnumeric_how
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  21603c5
- Add tests for schema migration
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  0de29fd
- Add safe_load to list of functions that can be directly imported
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Commits on Jul 14, 2026
- Add column names and dtypes to validate_schema() and call this before expunging or flagging
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  8f1fbf6
- Merge pull request #33 from quant-aq/sdcard-reflagging-sc-20242
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- Attempt to update docs
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  609c38a
- Another attempt at making docs
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  8b9a47c
- Actually succeed at updating docs
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- Undo package re-name
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  e443b00
- Update list of supported Python versions
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  36eaf77
- gitignore vscode settings
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  49189e5
- Add overview of library funcs
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  8581201
- fix: add optional args to merge command
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  b3e23f8
- Update usage docs
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  14cfe15
- Remove unused loguru levels
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  2a9fe0b
- Change default suffixes for keep=left/left to empty string (columns retain their original names)
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  d14bc68
- Format usage.rst
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  af3461e
- Delete test log files
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  f6b323f
- Update log usage without renamed package
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  92504b5
- Add logging configs and imports
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  4b20e02
- Allow imports from toolkit module
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  f142999
- Don't coerce dtypes when expunging and move flag nan check to flag_dataframe
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  156b4f9
- Don't coerce dtypes when expunging and move flag nan check to flag_dataframe
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  aa77d34
- For duplicated columns after merging, collapse if the duplicated columns are identical
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  28deb3b
- Modify merge tests to account for collapsed duplicated, identical columns and don't safe_load merge output
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  b8b9825
- Create example notebook for using the Python library
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  5c0d811
- Fix docstring indentation issue
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  f1002fc
- Fix docstring indentation issue
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  c549454
- Don't cross-reference options
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  05027dc
- Re-run notebook
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  e4b29e1
- Move merge columns assertion to a helper func; and undo no safe_loading of df3
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  3ecaf2a
- Add tests for keep left/right
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  e8666b0
- Don't use default merge test assertion if keep=left/right
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  83d7cdb
- Remove extra cells
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  8cb2013
- Fix indentation issues again
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  bbf3120
- Re-introduce default schema validation for expunge and flag
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  1bbdad5
- Add test for nan flags
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  4f9531b
- Modify public vs private functions
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  4f74cc7
- Remove extra cells again
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  8cbf4e7
- fix: fix cli suffixes specification and add tests for custom suffixes
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  cf5d278
- Re-order imports
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  c46a7a2
Commits on Jul 15, 2026
- Move jupyter to dev deps
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  14da369
- Bump poetry version to 1.8.4 in gh-actions
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  82f39cc
- Add a docs preview artifact for PRs
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  23f2ab6
- Merge pull request #34 from quant-aq/emmleroy-sc-20244-update-docs
  emmleroy
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  bdf0106

Commits

Commits on Jun 24, 2026

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Commits on Jun 29, 2026

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Commits on Jul 10, 2026

Commits on Jul 13, 2026

Commits on Jul 14, 2026

Commits on Jul 15, 2026