rewire-bio
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genomics-mcp
genomics-mcp PublicUnified MCP access to genomic archives, reference databases and indexed sequencing files
Python 3
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rewire-benchmarks
rewire-benchmarks PublicIndependent, reproducible benchmarks for AI models in biology
Python
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rewire-database
rewire-database PublicSource-backed biological model benchmarks, reviewed evidence and catalogue website
TypeScript
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ligand-fingerprint-atlas
ligand-fingerprint-atlas PublicReproducible pilot of shared-ligand protein networks and interaction-derived protein representations
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registry
registry PublicForked from biocontext-ai/registry
The BioContextAI Registry for biomedical MCP servers
Python
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Repositories
- implicit-splicing Public
Research protocol for learning splice recognition through genomic DNA-to-mature-transcript sequence prediction.
- rewire-benchmark-data Public
Reviewed biological benchmark evidence, validation and immutable data releases, independent of the benchmark website.
- rewire-database Public
Source-backed biological model benchmarks, reviewed evidence and catalogue website
- evo2-cloud-operations Public
Reproducible Evo 2 7B runs on AWS, Google Cloud and RunPod: setup, cost, GPU memory and cross-cloud agreement
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- evo2-size-by-use-case Public
Which clinical genomics use cases can run on a smaller Evo 2 model, and on what hardware; study in preparation
- rdf-kg-mcp Public
Serve versioned, pre-reasoned RDF knowledge-graph bundles read-only over the Model Context Protocol
- cell-type-annotation-transfer Public
Reproducible study of cell-type annotation transfer and reference coverage; study in preparation
- rhodopsin-model-selection Public
Model-selection blog series: in silico study of rhodopsin wavelength model selection; manuscript and reproduction migration in progress
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