Issues

• cometspy.comets overrides user defined output filenames

  segrelab/cometspy#64 · Filter by author surh opened on Apr 14, 2026

• Clarification regarding COMETS parameters

  segrelab/cometspy#63 · Filter by author SandhyaVasu opened on Dec 18, 2025

• MP infeasibility problem - Competition assay and competitive exclusion

  segrelab/cometspy#62 · Filter by author anastasiasanto opened on Dec 1, 2025

• Varying biomass trends with different sequence of model additions

  segrelab/cometspy#61 · Filter by author SandhyaVasu opened on Sep 22, 2025
  9

• NaN returned in total biomass log due to default biomass parameters

  segrelab/cometspy#53 · Filter by author zoey-rw opened on May 26, 2024
  3

• Parsing intermediate files to match final outputs

  segrelab/cometspy#52 · Filter by author zoey-rw opened on Apr 17, 2024
  1

• 'comets.py' error

  segrelab/cometspy#50 · Filter by author 2132030 opened on Feb 23, 2024
  21

• UnicodeDecodeError: 'utf-8'

  segrelab/cometspy#46 · Filter by author complicatedZ opened on Jan 9, 2024
  4

• Biomass coordinates don't match the flux coordinates

  segrelab/cometspy#44 · Filter by author hgscott opened on Sep 25, 2023
  3

  

• Print progression messages from COMETS while it is running

  segrelab/cometspy#43 · Filter by author hgscott opened on Sep 8, 2023
  1

  

• The function or variable 'getSecAbsExcMets' is not recognized

  segrelab/cometspy#42 · Filter by author yqq-79 opened on Sep 4, 2023
  3

• Models input order affect metabolites flux and biomass.

  segrelab/cometspy#41 · Filter by author Shlomit840 opened on Aug 30, 2023
  7

• Make an installation page

  segrelab/cometspy#38 · Filter by author hgscott opened on Aug 23, 2023
  

• Make template/set of best practices for writing docstrings

  segrelab/cometspy#37 · Filter by author hgscott opened on Aug 18, 2023
  

• Change the name of the default branch to main

  segrelab/cometspy#34 · Filter by author hgscott opened on Aug 16, 2023
  

• line_terminator is deprecated

  segrelab/cometspy#33 · Filter by author hgscott opened on May 23, 2023
  1

• Add a project description on PyPI

  documentation
  segrelab/cometspy#32 · Filter by author hgscott opened on May 18, 2023
  

• Automate releases

  enhancement
  segrelab/cometspy#29 · Filter by author hgscott opened on May 18, 2023
  

• Problem with set_specific_metabolite_at_location.

  segrelab/cometspy#22 · Filter by author dukovski opened on Feb 7, 2023

• weird behavior with static compounds

  segrelab/cometspy#20 · Filter by author hariszaf opened on Dec 6, 2022
  3