0.10.3

Minor bug fix, improving log messaging & html report

• Fix the index overflow bug when total elements of activation matrix reaches 2^31
• Improve log messaging and parameter names
• Add fscore threshold to motif ranking table to avoid poorly classified motif concept confuses the user

Full Changelog: 0.10.2...0.10.3

0.10.2

Optimize saving and loading of CavTrainer, avoid huge memory consumption when multiple instances are saved and loaded

Full Changelog: 0.10.1...0.10.2

0.10.1

New rust backend to optimize python functions

1. thin_svd backed by rust faer to break the 32bit integer index limit of LAPACK
2. sample_from_pwm in rust improves efficiency when sampling motif instances

What's Changed

• Add Rust backend to improve performance by @yztxwd in #1

New Contributors

• @yztxwd made their first contribution in #1

Full Changelog: 0.9.11...0.10.1

0.9.11

Minor fix

• Now using pybedtools.BedTool to load bed file to avoid missing columns
• Fix the issue that the strand information of sequence bed concept is missing

Full Changelog: 0.9.10...0.9.11

0.9.10

Minor fix: put pca evaluation calculation on cpu to avoid OOM on GPU

Improvement: add download buttons for tables in html report

Full Changelog: 0.9.9...0.9.10

0.9.9

Add heuristic way to determine # samples per concept when it's not specified

Full Changelog: 0.9.8...0.9.9

0.9.8

Small bug fix, improving messaging, especially on reporting quality of PCA transformation

Full Changelog: 0.9.7...0.9.8

0.10.1a

Add multiple features by claude:

• Improve loading data from npy file to reduce memroy footprint by avoid array copy
• add new de_corr backend using a single linear layer with loss function on covariance matrix, this allows tpcav works at big models
• performance optimization at multiple places

Full Changelog: 0.9.6...0.10.1a

0.9.7

Improve memory usage when evaluating classifier

Full Changelog: 0.9.6...0.9.7

0.9.6

Fix a bug that storing attributed layer in tpcav model causes captum to register hook twice on the same module

Full Changelog: 0.9.5...0.9.6