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PfTPN
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This repository is to show all the analysis of the essential genome of Plasmodium falciparum via transposon mutagenesis

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API_PfTPN
API_PfTPN
 
 
Essentiality_scores
Essentiality_scores
 
 
Figures
Figures
 
 
ONT_gDNA_longread
ONT_gDNA_longread
 
 
IIE_PfPkcomparison.R
IIE_PfPkcomparison.R
 
 
Insertions_distribution.R
Insertions_distribution.R
 
 
MIS_WT_vesus_MIS_MEV.R
MIS_WT_vesus_MIS_MEV.R
 
 
PfTPN_Proportion_statistics.R
PfTPN_Proportion_statistics.R
 
 
Pf_theo_TTAA_identification.R
Pf_theo_TTAA_identification.R
 
 
PlasmoDB_track.R
PlasmoDB_track.R
 
 
QC_Upset20241011.R
QC_Upset20241011.R
 
 
QC_background_genes_99CDS_sites.R
QC_background_genes_99CDS_sites.R
 
 
README.md
README.md
 
 
Step1_cm_merge_cm_Location_conversion_for_exon_or_both_exon_intron.R
Step1_cm_merge_cm_Location_conversion_for_exon_or_both_exon_intron.R
 
 
Step2_countmatrix_siteslevel_bg_noise_removal_CPM.R
Step2_countmatrix_siteslevel_bg_noise_removal_CPM.R
 
 
Step2_countmatrix_template_UTR_annotation.R
Step2_countmatrix_template_UTR_annotation.R
 
 
Step3_Countmatrix2transposonmatrix.R
Step3_Countmatrix2transposonmatrix.R
 
 
after_count_theo_reads_count_matrix_Pf_chimera.R
after_count_theo_reads_count_matrix_Pf_chimera.R
 
 
countmatrix_template_generation_PfTNSeq202410_chimera.R
countmatrix_template_generation_PfTNSeq202410_chimera.R
 
 
exon_intron_Description_of_data.R
exon_intron_Description_of_data.R
 
 
geneconfidentcall.R
geneconfidentcall.R
 
 
readme.txt
readme.txt
 
 
readme202504.txt
readme202504.txt
 
 
sample_variance_checking_normalization.R
sample_variance_checking_normalization.R
 
 
saturation_level_estimation_bidirectional.R
saturation_level_estimation_bidirectional.R
 
 
saturation_level_estimation_unidirectional.R
saturation_level_estimation_unidirectional.R
 
 
site_level_simulation.R
site_level_simulation.R
 
 

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PfTPN

This repository is to show all the analysis of the essential genome of Plasmodium falciparum via transposon mutagenesis

About

This repository is to show all the analysis of the essential genome of Plasmodium falciparum via transposon mutagenesis

Resources

Readme
Activity

Stars

1 star

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0 watching

Forks

1 fork
Report repository

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