ST_MultiCAST

CPVAE-based modeling framework for identifying dynamic, spatial-temporal fitness programs and putative genetic drivers of Vibrio cholerae colonization from MultiSCAST data.

Name		Name	Last commit message	Last commit date
.claude		.claude
.ipynb_checkpoints		.ipynb_checkpoints
Input		Input
Output		Output
.DS_Store		.DS_Store
Figure1_four_model_benchmark_summary.ipynb		Figure1_four_model_benchmark_summary.ipynb
Figure2_rank2_to_rank10_program_landscapes_and_rank8_drivers.ipynb		Figure2_rank2_to_rank10_program_landscapes_and_rank8_drivers.ipynb
Figure3_rank8_program_temporal_spatial_specificity.ipynb		Figure3_rank8_program_temporal_spatial_specificity.ipynb
Figure4_CPVAE_rank8_GO_enrichment.ipynb		Figure4_CPVAE_rank8_GO_enrichment.ipynb
Figure5_CPVAE_advantage_genes_and_GO.ipynb		Figure5_CPVAE_advantage_genes_and_GO.ipynb
Figure6_rank8_program_distinctness_interpretability.ipynb		Figure6_rank8_program_distinctness_interpretability.ipynb
Module_driver3_modified.ipynb		Module_driver3_modified.ipynb
Module_driver4.ipynb		Module_driver4.ipynb
README.md		README.md

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