v3.2.0

Please download preseq-3.2.0.tar.gz or preseq-3.2.0.zip
Not the "Source code" files auto-generated below by GitHub, as those do not have all files needed to build preseq.

Changes in release v3.2.0: None to behavior of the tools. Only changes are to repo organization/configuration for conda.

header_fix2

Added another header. Thanks @knowah and @pgfoster!

v3.1.1 headerfix

Fixed a header that caused problems when enabling hts during configuration (thanks @birnbera!)

v3.1.0 pop_size

Added a new module, pop_size, that identifies the number of distinct species in a sample.

v3.0.2 - gsl_removal_pt2

Release notes:

• GSL has been completely removed.
• A data directory has been added for testing our programs.

v3.0.1 - gsl_removal_pt1

Major updates:

• GSL has been removed for the c_curve, gc_extrap, and lc_extrap. It is still required for bound_pop.
• To use the bound_pop module, an extra flag must be specified during configuration (similar to HTSLib). See README for instructions.

Please download preseq-3.0.1.tar.gz, not the source code or .zip files.

v3.0 - prestarted

Changes to 3.0:

• If the input in BAM/SAM format, then HTSLib must already be installed.
• Changes to installation procedure

NOTE: please download preseq-3.0.tar.gz, not the Source code files.

v2.0.3

Version 2.0.3, same as version 2.0.2 but fixed a bug in defect mode when using bed files. Many thanks to @nishill for pointing this out and proposing a fix.

preseq v2.0.2

Defect mode now works properly, allowing for extrapolation of difficult and troublesome experiments.

preseq v2.0.1

Including smithlab_cpp in the tarball.