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report: record curator decisions; fix analysis index placement - #49
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…ld loci collapsed) Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Follow-up to #48. These two changes were pushed to
report-genomeafter #48 was merged, so they never reachedmain.analysis/2026-10-07_report-design-review.mdand the analysis index:detectwritesreport.htmlby default, with--no-html/MATPREDICT_HTML=0to opt out;analysis/INDEX.md. The merge ofmaininto Per-genome HTML/PDF report, written by detect by default #48 had put the report row inside the "Reads-only typing" table, marked "open". It now has its own "Reports and tooling" section, marked "decided; PR Per-genome HTML/PDF report, written by detect by default #48". The updated Fola and A. fumigatus reads rows are kept as they are.Docs only; no code changes. The tree is identical to the final
report-genome.🤖 Generated with Claude Code