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data(sorting-hat): activate CFEM, hydrophobin-class Pfam families; add candidate families - #75

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signoff-cfem-hydrophobin
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hyphaltip wants to merge 3 commits into
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Owner decisions of 2026-10-08.

  • Activates CFEM (PF05730) and Hydrophobin (PF01185).
  • Activates the hydrophobin-class models PF06766, PF22354, PF28987, PF29785 (Hydrophobin_D, recovers RodD that PF01185 misses), PF29802, PF29465 and PF12296 (HsbA).
  • Adds the repeat-domain candidates PF00624, PF13928 (flocculin), PF15789 (Hyr1), PF22799 (PIR1-like) and PF30910 (ALS_M) as inactive rows. No specificity review yet.
  • Cerato-platanin (PF07249) is out of scope and not in the table.
  • Activation is evidence only. Call status stays unvalidated.
  • Adds the 8-proteome search scripts in analysis/sorting_hat_run/hydrophobin_discovery/.

Tests: 683 passed, 7 skipped in tests/cellsurface_sorting_hat.

🤖 Generated with Claude Code

hyphaltip and others added 3 commits October 8, 2026 08:46
…as active

Owner sign-off 2026-10-08 after the review of 16 rows (CFEM 7, Hydrophobin 1 accepted as members; CSA2 accepted).
CFEM keeps the no_tm condition. Status stays unvalidated: evidence only. On the stored runs: Hydrophobin calls
1 to 6 proteins per proteome, CFEM 1 to 7. The shipped-table test pins the signed-off set.

Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…d candidate families (inactive)

Activates PF06766, PF22354, PF28987, PF29785 (Hydrophobin_D, recovers RodD) and PF29802
under the owner rule that a hydrophobin Pfam model places a protein in the category.
Adds PF29465, PF12296 HsbA, PF07249 Cerato-platanin and five adhesion-repeat domain
candidates as inactive rows. Adds the 8-proteome search scripts.

Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
…atanin, classify repeat-domain candidates

Owner decisions 2026-10-08: PF29465 and PF12296 count as hydrophobins; PF07249 is out of
scope; PF00624 and PF13928 under flocculin; PF15789, PF22799, PF30910 labelled by role.
The five repeat-domain families stay inactive until reviewed.

Co-Authored-By: Claude Sonnet 5.5 <noreply@anthropic.com>
@hyphaltip hyphaltip closed this Oct 9, 2026
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Superseded: hydrophobin rows moved to pfam_hydrophobin in hydrophobin-validation; note fix carried as 97f2676

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