Mahim1997 / wQFM-2020 Star 20 Code Issues Pull requests wQFM implementation in Java python java bioinformatics perl phylogenetics bash-script dendropy species-tree phylonet gene-tree weighted-quartets Updated Mar 5, 2023 Perl
uym2 / MinVar-Rooting Star 18 Code Issues Pull requests Linear-time rooting of phylogenetic trees tree dendropy mp-reroot mv-reroot Updated Jun 12, 2023 Python
specifysystems / lmpy Star 4 Code Issues Pull requests A library of tools useful for Lifemapper and related computations randomization numpy-arrays dendropy null-model presence-absence-matrix Updated Jul 31, 2023 Python
jmenglund / predsim Star 2 Code Issues Pull requests Simulate predictive datasets from MrBayes' output simulation phylogenetics bayesian molecular-evolution dna-sequences mrbayes dendropy posterior-predictive seq-gen Updated Jul 11, 2019 Python
Zsailer / scipy-2018 Star 2 Code Issues Pull requests "Resurrecting ancient proteins in Python" (SciPy 2018 talk by Zach Sailer) pandas biopython phylogenetics vega dendropy scipy2018 Updated Jul 11, 2018 Jupyter Notebook
biotaphy / analyses Star 2 Code Issues Pull requests This repository houses analyses that can be deployed on BiotaPhy compute resources for access to high throughput computing pam phylogenetic-trees biodiversity dendropy ancestral-character-reconstruction presence-absence-matrix phylogenetic-beta-diversity Updated Nov 22, 2019 Python
jmenglund / pandas-charm Star 0 Code Issues Pull requests Python library for getting character matrices (alignments) into and out of pandas python pandas biopython alignment character-matrix dendropy aligned-sequences Updated May 19, 2019 Python