Extract metadata from biosamples in NCBI
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Updated
Mar 12, 2026 - Python
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ncbi-biosamples
Here are 6 public repositories matching this topic...
A tool to prepare files and run/monitor programmatic submissions to NCBI
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Mar 5, 2024 - Python
ncbi loader via the eutils interface
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Mar 15, 2025 - PHP
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
bioinformatics-pipeline genbank ncbi-submission ncbi-genbank cdc sra ncbi-sra ncbi-biosamples biosample seqsender ncird ncird-id cdc-influenza-division
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Sep 23, 2026 - Python
HULK is a fully automated, containerized pipeline for processing bulk RNA-seq data directly from SRA accessions
bioinformatics rna-seq computational-biology bioinformatics-pipeline rnaseq rna-seq-analysis rna-seq-data bioinformatics-analysis rna-seq-pipeline bioinformatics-tool bulk-rna-seq ncbi-sra ncbi-biosamples rnaseq-pipeline
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Oct 3, 2026 - Python
R client for accessing the omicidx database
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Oct 1, 2026 - R
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