Issues

• Add badges to README

  tseemann/nullarbor#302 · Filter by author tseemann opened on Dec 9, 2025

• Can't locate Bio/SeqIO.pm in @INC

  tseemann/nullarbor#300 · Filter by author claramicro opened on May 10, 2023

• Gubbins

  tseemann/nullarbor#299 · Filter by author Skiucabe1 opened on Apr 17, 2023

• Custom abricate db

  tseemann/nullarbor#298 · Filter by author Dangoh opened on Aug 1, 2022

• start with assembled genomes / cgMLST

  tseemann/nullarbor#297 · Filter by author shlomobl opened on May 19, 2022
  1

• Error can not read sequence

  tseemann/nullarbor#296 · Filter by author akarkaba opened on Apr 26, 2022

• Centrifuge Issue on Install

  tseemann/nullarbor#293 · Filter by author peflanag opened on Nov 5, 2021

• make: *** [3960_Saga/sketch.msh] Error 127

  tseemann/nullarbor#292 · Filter by author naikd0 opened on Nov 3, 2021

• error running nullarbor skesa

  tseemann/nullarbor#288 · Filter by author BettyAC opened on Jun 16, 2021
  3

• nullarbor --check doesn't see version of shovill although shovill is installed

  tseemann/nullarbor#285 · Filter by author katerinka-arh opened on Feb 3, 2021

• no roary and report

  tseemann/nullarbor#284 · Filter by author balsa012 opened on Dec 15, 2020
  1

• File names

  tseemann/nullarbor#283 · Filter by author Dangoh opened on Nov 19, 2020

• Error installing NULLARBOR

  tseemann/nullarbor#281 · Filter by author acgonzalezz opened on Oct 28, 2020
  3

• Set tmp folder?

  tseemann/nullarbor#280 · Filter by author petroslad opened on Oct 22, 2020

• Perl v.5.26.0 vs v.5.24.0?

  tseemann/nullarbor#279 · Filter by author Michael-Sikorski opened on Oct 20, 2020

• centrifuge database problem

  tseemann/nullarbor#275 · Filter by author abdeljalil-senhaji opened on Aug 2, 2020
  1

• MakeFile:154: ref.fa.fai error 1

  help wanted
  tseemann/nullarbor#272 · Filter by author peflanag opened on Jun 18, 2020
  2

  

• Nullarbor fails at MLST step

  tseemann/nullarbor#271 · Filter by author mdiricks opened on Jun 18, 2020

• Deleted isolates still present in MLST table

  bug
  tseemann/nullarbor#268 · Filter by author pydupont opened on Jun 11, 2020
  1

  

• Query: Mixed sample - separate reads?

  help wanted
  tseemann/nullarbor#267 · Filter by author peflanag opened on Jun 3, 2020
  2

  

• Query: Plasmid Annotation

  tseemann/nullarbor#266 · Filter by author dan-hud opened on Apr 22, 2020

• Suggestion: Improved error messages for bad fastqs that cause problems

  enhancement
  tseemann/nullarbor#265 · Filter by author morganx opened on Apr 6, 2020
  1

  

• ERROR: Could not find .aligned.fa/.vcf in 'file' make: *** [Makefile:108: core.aln] Error 2

  help wanted
  tseemann/nullarbor#264 · Filter by author sharbie88 opened on Apr 6, 2020
  2

  

• minikraken2 database link needs to be updated

  bug
  tseemann/nullarbor#263 · Filter by author ramay opened on Mar 31, 2020
  

• Error - report not written and empty samples

  help wanted
  tseemann/nullarbor#262 · Filter by author tristanpwdennis opened on Mar 12, 2020
  1