All pull requests

Pull requests

• Build the positional variance confusion matrix with np.bincount

  #117·gdevenyi opened Oct 1, 2026·

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  9

• Precompute the allowed positions of each event in ZscoreSustain

  #116·gdevenyi opened Oct 1, 2026·

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  1

• Reuse stage likelihoods across MCMC samples when staging subjects

  #115·gdevenyi opened Oct 1, 2026·

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  5

• Cache stage sums when evaluating cross-validation likelihoods

  #114·gdevenyi opened Oct 1, 2026·

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  3

• Port MCMC likelihood cache to MixtureSustain

  #113·gdevenyi opened Oct 1, 2026·

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  1

• Port EM speed-ups to MixtureSustain

  #112·gdevenyi opened Oct 1, 2026·

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  3

• Port MCMC likelihood cache to OrdinalSustain

  #111·gdevenyi opened Oct 1, 2026·

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  1

• Port EM speed-ups to OrdinalSustain

  #110·gdevenyi opened Oct 1, 2026·

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  1

• Compute OrdinalSustain stage likelihoods as one matrix product

  #109·gdevenyi opened Oct 1, 2026·

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  1

• Port MCMC likelihood cache to MixedTypeSustain

  #108·gdevenyi opened Oct 1, 2026·

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  1

• Port EM speed-ups to MixedTypeSustain

  #107·gdevenyi opened Oct 1, 2026·

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  1

• Compute MixedTypeSustain stage likelihoods as one matrix product

  #106·gdevenyi opened Oct 1, 2026·

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  5

• Port MCMC likelihood cache to ZscoreSustainMissingData

  #105·gdevenyi opened Oct 1, 2026·

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  1

• Port EM speed-ups to ZscoreSustainMissingData

  #104·gdevenyi opened Oct 1, 2026·

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  1

• Compute ZscoreSustainMissingData stage likelihoods as one matrix product

  #103·gdevenyi opened Oct 1, 2026·

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  1

• Make the MCMC tuning iterations configurable

  #102·gdevenyi opened Oct 1, 2026·

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  3

• Weight by f with a product over subtypes in _calculate_likelihood

  #101·gdevenyi opened Oct 1, 2026·

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  1

• Broadcast f in _calculate_likelihood instead of tiling it

  #100·gdevenyi opened Oct 1, 2026·

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  1

• Cache only per-subtype stage sums in ZscoreSustain MCMC

  #99·gdevenyi opened Oct 1, 2026·

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  1

• Reuse stage likelihoods of unchanged sequences in ZscoreSustain MCMC

  #98·gdevenyi opened Oct 1, 2026·

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  1

• Keep only the best candidate's p_perm_k in EM

  #97·gdevenyi opened Oct 1, 2026·

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  1

• Score EM candidate sequences from per-subtype stage sums

  #96·gdevenyi opened Oct 1, 2026·

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  1

• Compute ZscoreSustain stage likelihoods as one matrix product

  #95·gdevenyi opened Oct 1, 2026·

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  1

• Use log(p_missingdata) for missing values in ZscoreSustainMissingData

  #94·gdevenyi opened Oct 1, 2026·

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  1

• Fix positional variance plots for more than 6 z-scores or uneven Z_vals

  #93·gdevenyi opened Oct 1, 2026·

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  3