Skip to content
@uio-bmi

Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

Pinned Loading

  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 76 31

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 30 7

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 26 9

Repositories

Showing 10 of 86 repositories
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    uio-bmi/immuneML's past year of commit activity
    Python 76 AGPL-3.0 31 0 1 Updated Oct 2, 2026
  • immuneml_tools Public

    Galaxy tools using the immuneML conda package.

    uio-bmi/immuneml_tools's past year of commit activity
    Python 1 0 0 1 Updated Sep 30, 2026
  • StarSignDNA Public
    uio-bmi/StarSignDNA's past year of commit activity
    Python 4 MIT 1 0 0 Updated Sep 29, 2026
  • AIRR-ML-BM-2025 Public
    uio-bmi/AIRR-ML-BM-2025's past year of commit activity
    Python 0 0 0 0 Updated Aug 31, 2026
  • stats_for_cs Public

    Accompanying notebooks for the new stats course for computer scientists with simulations

    uio-bmi/stats_for_cs's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 12, 2026
  • adaptive_immune_profiling_challenge_2025 Public

    Website for AIRR-ML-25: Adaptive Immune Profiling Challenge. Participants will predict immune repertoire labels (e.g. disease, healthy) and identify label-associated receptor sequences.

    uio-bmi/adaptive_immune_profiling_challenge_2025's past year of commit activity
    3 0 0 0 Updated Nov 25, 2025
  • predict-airr Public

    Starter code template recommendation for the participants for structuring their implementations

    uio-bmi/predict-airr's past year of commit activity
    Python 7 12 0 0 Updated Nov 4, 2025
  • SimCal Public

    Meta-simulation framework for evaluating ML method selection

    uio-bmi/SimCal's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 23, 2025
  • fdr_under_dependencies Public
    uio-bmi/fdr_under_dependencies's past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Aug 5, 2025
  • ligo Public

    LIgO is a tool for simulation of adaptive immune receptors and repertoires.

    uio-bmi/ligo's past year of commit activity
    Python 1 AGPL-3.0 2 1 0 Updated May 27, 2025
View all repositories