Issues

• Select the reader from the file format

  bug
  vertesy/Seurat.utils#155 · Filter by author vertesy opened on Sep 2, 2026

• Bare call to Rocinante::list.dirs.depth.n() -- Rocinante says no package should depend on it

  vertesy/Seurat.utils#152 · Filter by author vertesy opened on Sep 2, 2026

• Documentation bug: check_man Finds an unexpectedly high number of unlinked items and Undocumented arguments in .Rd files.

  bug
  vertesy/Seurat.utils#146 · Filter by author vertesy opened on Sep 1, 2026
  

• clUMAP and qUMAP should follow the ggExpress standard way of controlling output.

  enhancement
  vertesy/Seurat.utils#122 · Filter by author vertesy opened on Jul 22, 2026
  

• qs issue

  bug
  vertesy/Seurat.utils#119 · Filter by author KGSchilling opened on May 14, 2026
  3

  

• xsave could additionally return the file path to a global list as a new element, so that you never lose the path

  enhancement
  vertesy/Seurat.utils#117 · Filter by author vertesy opened on Jan 3, 2026

• subsetSeuObjByIdent should handle multiple columns at once

  enhancement
  vertesy/Seurat.utils#83 · Filter by author vertesy opened on Nov 20, 2024

• Reassign Scattered Cells on UMAP Based on KNN Graph Composition (distance)

  enhancement
  vertesy/Seurat.utils#82 · Filter by author vertesy opened on Nov 14, 2024
  1

• drawConnectors in scEnhancedVolcano sometimes leads to Error

  bug
  vertesy/Seurat.utils#80 · Filter by author vertesy opened on Jun 14, 2024

• Error in RenameGenesSeurat

  vertesy/Seurat.utils#78 · Filter by author JH-42 opened on Jun 8, 2024
  4

• Installation requires DatabaseLinke.R

  bug
  vertesy/Seurat.utils#76 · Filter by author vertesy opened on Jun 5, 2024

• downsampling in scBarplot.CellFractions works unexpectedly: if the 5% thr is used, it does not "upsample" smaller categories

  bug
  vertesy/Seurat.utils#73 · Filter by author vertesy opened on Apr 23, 2024
  1

• Error in RenameGenesSeurat

  bug
  vertesy/Seurat.utils#65 · Filter by author jenellewallace opened on Jan 29, 2024
  10

• qUMAP should have auto-suffixing by splitby

  enhancement
  vertesy/Seurat.utils#48 · Filter by author vertesy opened on Nov 14, 2021

• ToDo

  documentation
  vertesy/Seurat.utils#1 · Filter by author vertesy opened on Sep 17, 2020