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Switch from ERS to SAMEA as the primary sample accession

Status: Open.

#69 In AustralianBioCommons/atol-canopy;

· keeva-c opened on Sep 24, 2026

Review Specimen naming on ENA

Status: Open.

#68 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Sep 22, 2026

organisms - replace augustus_dataset_name with tiberius_model

Status: Open.

#67 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Sep 16, 2026

Possible constraint - multiple qc_reads entries with the same checksums should be disallowed

Status: Open.

#66 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Sep 9, 2026

Return data for genome note

Status: Open.

#61 In AustralianBioCommons/atol-canopy;

· keeva-c opened on Aug 25, 2026

Work out where to store primary/secondary assembly files, and stats

Status: Open.

#60 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 25, 2026

assemblies need to be linked to more than one project

Status: Open.

#57 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 24, 2026

Canopy assembly objects use the specimen-level sample ID in the read_files dict

Status: Open.

#54 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 21, 2026

/api/v1/assemblies/submission/ should accept the assembly_run_id

Status: Open.

#52 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 20, 2026

Accessions not synced between entity and entity_submission tables

Status: Open.

#50 In AustralianBioCommons/atol-canopy;

· keeva-c opened on Aug 13, 2026

Can't submit additional Samples and Experiments after the genomic data BioProject is created

Status: Open.

#49 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 12, 2026

/api/v1/assemblies/{assembly_id}/qc-reads/report accepts multiple identical reports

Status: Open.

#48 In AustralianBioCommons/atol-canopy;

· TomHarrop opened on Aug 11, 2026