[docs]: add example data for compatible models

.github/workflows/update-rceattle-example-data.yml

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+# Update example data when convert_output.R or variable-name resources change
+name: update-rceattle-example-data
+on:
+  pull_request:
+    branches: [main]
+    paths:
+      - 'R/convert_output.R'
+      - 'inst/resources/rceattle_var_names.csv'
+  workflow_dispatch:
+jobs:
+  update-example-data:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          repository: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.repo.full_name || github.repository }}
+          ref: ${{ github.event_name == 'pull_request' && github.event.pull_request.head.ref || github.ref_name }}
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pak, any::usethis, local::.
+
+      - name: Update example data
+        run: Rscript data-raw/DATASET_RCEATTLE.R
+
+      - name: Commit and push updated example data
+        if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git add data/pollock.rda
+          git diff --cached --quiet || git commit -m "chore: update rceattle pollock example from converter resource changes (triggered by $(git log -1 --pretty=format:'%h %s' HEAD)) [skip ci]"
+          git push

data-raw/DATASET_BAM.R

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+## code to prepare `VermilionSnapper` dataset goes here
+# Path to SS3 output file
+EX_REPORT_PATH <- file.path("inst", "extdata", "VermilionSnapper.rdat")
+# Install stockplotr
+pak::local_install(".")
+# Convert output
+VermilionSnapper <- stockplotr::convert_output(EX_REPORT_PATH)
+VermilionSnapper <- subset(VermilionSnapper, year > 1980)
+# Save object as rda into raw_data
+usethis::use_data(VermilionSnapper, overwrite = TRUE)

data-raw/DATASET_RCEATTLE.R

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+## code to prepare `RCEATTLE DATASET` dataset goes here
+# Run Rceattle
+install.packages(c("remotes")) # , "readxl"
+remotes::install_github("afsc-assessments/Rceattle")
+# library(Rceattle)
+# library(readxl)
+Rceattle::data("GOApollock")
+GOApollock$styr = 1977 # The SAFE model starts at 1970, so change styr to 1970 to run the full time series model (data is in there). I start them all at 1977 because thats the years with overlap.
+pollock_model <- Rceattle::fit_mod(
+  data_list = GOApollock,
+  inits = NULL, # Initial parameters = 0
+  file = NULL, # Don't save
+  estimateMode = 0, # 0 = Estimate, 1 = Dont run estimation
+  random_rec = FALSE, # No random recruitment
+  msmMode = 0, # 0 = Single species mode, 1 = MSVPA multi-species mode
+  verbose = 1, # Silence optimization output
+  phase = TRUE) # Use default phasing
+# Install stockplotr
+pak::local_install(".")
+# Convert output
+# OK not to subset bc small
+pollock <- stockplotr::convert_output(pollock_model)
+# Save object as rda into raw_data
+usethis::use_data(pollock, overwrite = TRUE)

data-raw/DATASET_SS3.R

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+## code to prepare `ss3_simple` dataset goes here
+install.packages(c("remotes"))
+remotes::install_github("r4ss/r4ss")
+# Path to SS3 output file
+r4ss_files <- system.file("extdata", "simple_small", package = "r4ss")
+EX_REPORT_PATH <- r4ss::SS_output(r4ss_files)
+# Install stockplotr
+pak::local_install(".")
+# Convert output
+ss3_simple <- stockplotr::convert_output(EX_REPORT_PATH)
+# Save object as rda into raw_data
+# replace with example_data once report file is deprecated
+usethis::use_data(ss3_simple, overwrite = TRUE)